Scalable Nucleotide Alignment Program
SNAP - short for Scalable Nucleotide Alignment Program - is a new sequence aligner that is 3-20x faster and just as accurate as existing tools like BWA-mem, Bowtie2 and Novoalign. It runs on commodity x86 processors, and supports a rich error model that lets it cheaply match reads with more differences from the reference than other tools, giving SNAP up to 2x lower error rates than existing tools and lets it match larger mutations that they may miss.
SNAP also natively reads BAM, FASTQ, or gzipped FASTQ, and natively writes SAM or BAM, with built-in sorting, duplicate marking, and BAM indexing.
Operating system:Win2000,Win7 x32,Win7 x64,Win98,WinOther,WinServer,WinVista,WinVista x64,WinXP,Other
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SNAP 0.15.4 
